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Rando Lab
Biochemistry and Molecular Pharmacology
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Publications
Total:
displaying 50 out of
96
results
Profiling of Pluripotency Factors in Single Cells and Early Embryos.
Author(s):
Hainer SJ, Bošković A, McCannell KN, Rando OJ, Fazzio TG
tRNA Genes Affect Chromosome Structure and Function via Local Effects.
Author(s):
Hamdani O, Dhillon N, Hsieh TS, Fujita T, Ocampo J, Kirkland JG, Lawrimore J, Kobayashi TJ, Friedman B, Fulton D, Wu KY, Chereji RV, Oki M, Bloom K, Clark DJ, Rando OJ, Kamakaka RT
Condensin-Dependent Chromatin Compaction Represses Transcription Globally during Quiescence.
Author(s):
Swygert SG, Kim S, Wu X, Fu T, Hsieh TH, Rando OJ, Eisenman RN, Shendure J, McKnight JN, Tsukiyama T
Paternal Exercise Improves Glucose Metabolism in Adult Offspring.
Author(s):
Stanford KI, Rasmussen M, Baer LA, Lehnig AC, Rowland LA, White JD, So K, De Sousa-Coelho AL, Hirshman MF, Patti ME, Rando OJ, Goodyear LJ
Transgenerational Epigenetic Inheritance.
Author(s):
Bošković A, Rando OJ
Small RNAs Gained during Epididymal Transit of Sperm Are Essential for Embryonic Development in Mice.
Author(s):
Conine CC, Sun F, Song L, Rivera-Pérez JA, Rando OJ
Small RNAs Are Trafficked from the Epididymis to Developing Mammalian Sperm.
Author(s):
Sharma U, Sun F, Conine CC, Reichholf B, Kukreja S, Herzog VA, Ameres SL, Rando OJ
Effects of Larval Density on Gene Regulation in Caenorhabditis elegans During Routine L1 Synchronization.
Author(s):
Chan IL, Rando OJ, Conine CC
Rlim-Dependent and -Independent Pathways for X Chromosome Inactivation in Female ESCs.
Author(s):
Wang F, McCannell KN, Bošković A, Zhu X, Shin J, Yu J, Gallant J, Byron M, Lawrence JB, Zhu LJ, Jones SN, Rando OJ, Fazzio TG, Bach I
Transcriptome-wide Analysis of Roles for tRNA Modifications in Translational Regulation.
Author(s):
Chou HJ, Donnard E, Gustafsson HT, Garber M, Rando OJ
A synthetic biology approach to probing nucleosome symmetry.
Author(s):
Ichikawa Y, Connelly CF, Appleboim A, Miller TC, Jacobi H, Abshiru NA, Chou HJ, Chen Y, Sharma U, Zheng Y, Thomas PM, Chen HV, Bajaj V, Müller CW, Kelleher NL, Friedman N, Bolon DN, Rando OJ, Kaufman...
LINE-1 activation after fertilization regulates global chromatin accessibility in the early mouse embryo.
Author(s):
Jachowicz JW, Bing X, Pontabry J, Bošković A, Rando OJ, Torres-Padilla ME
Metabolic Inputs into the Epigenome.
Author(s):
Sharma U, Rando OJ
Paternal nicotine exposure alters hepatic xenobiotic metabolism in offspring.
Author(s):
Vallaster MP, Kukreja S, Bing XY, Ngolab J, Zhao-Shea R, Gardner PD, Tapper AR, Rando OJ
DNA methylation directs genomic localization of Mbd2 and Mbd3 in embryonic stem cells.
Author(s):
Hainer SJ, McCannell KN, Yu J, Ee LS, Zhu LJ, Rando OJ, Fazzio TG
Micro-C XL: assaying chromosome conformation from the nucleosome to the entire genome.
Author(s):
Hsieh TS, Fudenberg G, Goloborodko A, Rando OJ
Regulation of X-linked gene expression during early mouse development by Rlim.
Author(s):
Wang F, Shin J, Shea JM, Yu J, Bošković A, Byron M, Zhu X, Shalek AK, Regev A, Lawrence JB, Torres EM, Zhu LJ, Rando OJ, Bach I
Dynamics of Nucleosome Positioning Maturation following Genomic Replication.
Author(s):
Vasseur P, Tonazzini S, Ziane R, Camasses A, Rando OJ, Radman-Livaja M
Intergenerational Transfer of Epigenetic Information in Sperm.
Author(s):
Rando OJ
Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals.
Author(s):
Sharma U, Conine CC, Shea JM, Boskovic A, Derr AG, Bing XY, Belleannee C, Kucukural A, Serra RW, Sun F, Song L, Carone BR, Ricci EP, Li XZ, Fauquier L, Moore MJ, Sullivan R, Mello CC, Garber M, Rando...
Genetic and Epigenetic Variation, but Not Diet, Shape the Sperm Methylome.
Author(s):
Shea JM, Serra RW, Carone BR, Shulha HP, Kucukural A, Ziller MJ, Vallaster MP, Gu H, Tapper AR, Gardner PD, Meissner A, Garber M, Rando OJ
Chromatin Dynamics and the RNA Exosome Function in Concert to Regulate Transcriptional Homeostasis.
Author(s):
Rege M, Subramanian V, Zhu C, Hsieh TH, Weiner A, Friedman N, Clauder-Münster S, Steinmetz LM, Rando OJ, Boyer LA, Peterson CL
R loops regulate promoter-proximal chromatin architecture and cellular differentiation.
Author(s):
Chen PB, Chen HV, Acharya D, Rando OJ, Fazzio TG
Epigenomics and the structure of the living genome.
Author(s):
Friedman N, Rando OJ
Comparative Genomics Reveals Chd1 as a Determinant of Nucleosome Spacing in Vivo.
Author(s):
Hughes AL, Rando OJ
Corrigendum: Increased CRF signalling in a ventral tegmental area-interpeduncular nucleus-medial habenula circuit induces anxiety during nicotine withdrawal.
Author(s):
Zhao-Shea R, DeGroot SR, Liu L, Vallaster M, Pang X, Su Q, Gao G, Rando OJ, Martin GE, George O, Gardner PD, Tapper AR
Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C.
Author(s):
Hsieh TH, Weiner A, Lajoie B, Dekker J, Friedman N, Rando OJ
Increased CRF signalling in a ventral tegmental area-interpeduncular nucleus-medial habenula circuit induces anxiety during nicotine withdrawal.
Author(s):
Zhao-Shea R, DeGroot SR, Liu L, Vallaster M, Pang X, Su Q, Gao G, Rando OJ, Martin GE, George O, Gardner PD, Tapper AR
I'm eating for two: parental dietary effects on offspring metabolism.
Author(s):
Rando OJ, Simmons RA
High-resolution chromatin dynamics during a yeast stress response.
Author(s):
Weiner A, Hsieh TH, Appleboim A, Chen HV, Rahat A, Amit I, Rando OJ, Friedman N
Suppression of pervasive noncoding transcription in embryonic stem cells by esBAF.
Author(s):
Hainer SJ, Gu W, Carone BR, Landry BD, Rando OJ, Mello CC, Fazzio TG
A system for genome-wide histone variant dynamics in ES cells reveals dynamic MacroH2A2 replacement at promoters.
Author(s):
Yildirim O, Hung JH, Cedeno RJ, Weng Z, Lengner CJ, Rando OJ
High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm.
Author(s):
Carone BR, Hung JH, Hainer SJ, Chou MT, Carone DM, Weng Z, Fazzio TG, Rando OJ
Father-son chats: inheriting stress through sperm RNA.
Author(s):
Sharma U, Rando OJ
Mechanisms underlying nucleosome positioning in vivo.
Author(s):
Hughes AL, Rando OJ
Feedback control of Set1 protein levels is important for proper H3K4 methylation patterns.
Author(s):
Soares LM, Radman-Livaja M, Lin SG, Rando OJ, Buratowski S
A histone acetylation switch regulates H2A.Z deposition by the SWR-C remodeling enzyme.
Author(s):
Watanabe S, Radman-Livaja M, Rando OJ, Peterson CL
Toward a unified physical model of nucleosome patterns flanking transcription start sites.
Author(s):
Möbius W, Osberg B, Tsankov AM, Rando OJ, Gerland U
Painting by numbers: increasing the parts list for chromatin domains.
Author(s):
Chen HV, Rando OJ
Fetal programming and environmental exposures: implications for prenatal care and preterm birth.
Author(s):
Schug TT, Erlebacher A, Leibowitz S, Ma L, Muglia LJ, Rando OJ, Rogers JM, Romero R, vom Saal FS, Wise DL
Daddy issues: paternal effects on phenotype.
Author(s):
Rando OJ
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors.
Author(s):
Wang J, Zhuang J, Iyer S, Lin X, Whitfield TW, Greven MC, Pierce BG, Dong X, Kundaje A, Cheng Y, Rando OJ, Birney E, Myers RM, Noble WS, Snyder M, Weng Z
Systematic dissection of roles for chromatin regulators in a yeast stress response.
Author(s):
Weiner A, Chen HV, Liu CL, Rahat A, Klien A, Soares L, Gudipati M, Pfeffner J, Regev A, Buratowski S, Pleiss JA, Friedman N, Rando OJ
A functional evolutionary approach to identify determinants of nucleosome positioning: a unifying model for establishing the genome-wide pattern.
Author(s):
Hughes AL, Jin Y, Rando OJ, Struhl K
A key role for Chd1 in histone H3 dynamics at the 3' ends of long genes in yeast.
Author(s):
Radman-Livaja M, Quan TK, Valenzuela L, Armstrong JA, van Welsem T, Kim T, Lee LJ, Buratowski S, van Leeuwen F, Rando OJ, Hartzog GA
Rewriting the epigenome.
Author(s):
Carone BR, Rando OJ
NURDs are required for diversity.
Author(s):
Fazzio TG, Rando OJ
Genome-wide identification and characterization of replication origins by deep sequencing.
Author(s):
Xu J, Yanagisawa Y, Tsankov AM, Hart C, Aoki K, Kommajosyula N, Steinmann KE, Bochicchio J, Russ C, Regev A, Rando OJ, Nusbaum C, Niki H, Milos P, Weng Z, Rhind N
Combinatorial complexity in chromatin structure and function: revisiting the histone code.
Author(s):
Rando OJ
Chromatin and transcription in yeast.
Author(s):
Rando OJ, Winston F
Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells.
Author(s):
Yildirim O, Li R, Hung JH, Chen PB, Dong X, Ee LS, Weng Z, Rando OJ, Fazzio TG
Sub1 and RPA associate with RNA polymerase II at different stages of transcription.
Author(s):
Sikorski TW, Ficarro SB, Holik J, Kim T, Rando OJ, Marto JA, Buratowski S
Evolutionary divergence of intrinsic and trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization.
Author(s):
Tsankov A, Yanagisawa Y, Rhind N, Regev A, Rando OJ
Genome-wide measurement of histone H3 replacement dynamics in yeast.
Author(s):
Rando OJ
Patterns and mechanisms of ancestral histone protein inheritance in budding yeast.
Author(s):
Radman-Livaja M, Verzijlbergen KF, Weiner A, van Welsem T, Friedman N, Rando OJ, van Leeuwen F
Dynamics of Sir3 spreading in budding yeast: secondary recruitment sites and euchromatic localization.
Author(s):
Radman-Livaja M, Ruben G, Weiner A, Friedman N, Kamakaka R, Rando OJ
Global regulation of H2A.Z localization by the INO80 chromatin-remodeling enzyme is essential for genome integrity.
Author(s):
Papamichos-Chronakis M, Watanabe S, Rando OJ, Peterson CL
Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals.
Author(s):
Carone BR, Fauquier L, Habib N, Shea JM, Hart CE, Li R, Bock C, Li C, Gu H, Zamore PD, Meissner A, Weng Z, Hofmann HA, Friedman N, Rando OJ
Control of chromatin structure by spt6: different consequences in coding and regulatory regions.
Author(s):
Ivanovska I, Jacques PÉ, Rando OJ, Robert F, Winston F
Genome-wide mapping of nucleosomes in yeast.
Author(s):
Rando OJ
Overlapping regulation of CenH3 localization and histone H3 turnover by CAF-1 and HIR proteins in Saccharomyces cerevisiae.
Author(s):
Lopes da Rosa J, Holik J, Green EM, Rando OJ, Kaufman PD
RNA polymerase mapping during stress responses reveals widespread nonproductive transcription in yeast.
Author(s):
Kim TS, Liu CL, Yassour M, Holik J, Friedman N, Buratowski S, Rando OJ
The role of nucleosome positioning in the evolution of gene regulation.
Author(s):
Tsankov AM, Thompson DA, Socha A, Regev A, Rando OJ
Recent evidence for pervasive adaptation targeting gene expression attributable to population size change.
Author(s):
Jensen JD, Rando OJ
Chromatin as a potential carrier of heritable information.
Author(s):
Kaufman PD, Rando OJ
Replication and active demethylation represent partially overlapping mechanisms for erasure of H3K4me3 in budding yeast.
Author(s):
Radman-Livaja M, Liu CL, Friedman N, Schreiber SL, Rando OJ
Chromatin 'programming' by sequence--is there more to the nucleosome code than %GC?
Author(s):
Hughes A, Rando OJ
High-resolution nucleosome mapping reveals transcription-dependent promoter packaging.
Author(s):
Weiner A, Hughes A, Yassour M, Rando OJ, Friedman N
Tracking lineages of single cells in lines using a microfluidic device.
Author(s):
Rowat AC, Bird JC, Agresti JJ, Rando OJ, Weitz DA
Nucleosome positioning: how is it established, and why does it matter?
Author(s):
Radman-Livaja M, Rando OJ
Genome-wide views of chromatin structure.
Author(s):
Rando OJ, Chang HY
Evolution in a test tube: the hatchet before the scalpel.
Author(s):
Rando OJ
Cell cycle- and chaperone-mediated regulation of H3K56ac incorporation in yeast.
Author(s):
Kaplan T, Liu CL, Erkmann JA, Holik J, Grunstein M, Kaufman PD, Friedman N, Rando OJ
Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network.
Author(s):
Chechik G, Oh E, Rando O, Weissman J, Regev A, Koller D
Reduced-representation methylation mapping.
Author(s):
Jeddeloh JA, Greally JM, Rando OJ
A biologist despairs over the difficulty of demonstrating heritability of chromatin states.
Author(s):
Rando O
Altered dosage and mislocalization of histone H3 and Cse4p lead to chromosome loss in Saccharomyces cerevisiae.
Author(s):
Au WC, Crisp MJ, DeLuca SZ, Rando OJ, Basrai MA
Chromatin remodelling at promoters suppresses antisense transcription.
Author(s):
Whitehouse I, Rando OJ, Delrow J, Tsukiyama T
Oliver Rando: taking chromatin analysis to the genomic scale. Interview by Ruth Williams.
Author(s):
Rando O
Independent and complementary methods for large-scale structural analysis of mammalian chromatin.
Author(s):
Dennis JH, Fan HY, Reynolds SM, Yuan G, Meldrim JC, Richter DJ, Peterson DG, Rando OJ, Noble WS, Kingston RE
Rules and regulation in the primary structure of chromatin.
Author(s):
Rando OJ, Ahmad K
Dynamics of replication-independent histone turnover in budding yeast.
Author(s):
Dion MF, Kaplan T, Kim M, Buratowski S, Friedman N, Rando OJ
Timescales of genetic and epigenetic inheritance.
Author(s):
Rando OJ, Verstrepen KJ
Global patterns of histone modifications.
Author(s):
Rando OJ
Chromatin structure in the genomics era.
Author(s):
Rando OJ
Distinct pathways for snoRNA and mRNA termination.
Author(s):
Kim M, Vasiljeva L, Rando OJ, Zhelkovsky A, Moore C, Buratowski S
Noisy silencing of chromatin.
Author(s):
Rando OJ, Paulsson J
Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin.
Author(s):
Raisner RM, Hartley PD, Meneghini MD, Bao MZ, Liu CL, Schreiber SL, Rando OJ, Madhani HD
Single-nucleosome mapping of histone modifications in S. cerevisiae.
Author(s):
Liu CL, Kaplan T, Kim M, Buratowski S, Schreiber SL, Friedman N, Rando OJ
Genome-scale identification of nucleosome positions in S. cerevisiae.
Author(s):
Yuan GC, Liu YJ, Dion MF, Slack MD, Wu LF, Altschuler SJ, Rando OJ
Developmentally induced changes in transcriptional program alter spatial organization across chromosomes.
Author(s):
Casolari JM, Brown CR, Drubin DA, Rando OJ, Silver PA
Genomic characterization reveals a simple histone H4 acetylation code.
Author(s):
Dion MF, Altschuler SJ, Wu LF, Rando OJ
The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II.
Author(s):
Kim M, Krogan NJ, Vasiljeva L, Rando OJ, Nedea E, Greenblatt JF, Buratowski S
Second messenger control of chromatin remodeling.
Author(s):
Rando OJ, Chi TH, Crabtree GR
Genomic expression programs and the integration of the CD28 costimulatory signal in T cell activation.
Author(s):
Diehn M, Alizadeh AA, Rando OJ, Liu CL, Stankunas K, Botstein D, Crabtree GR, Brown PO
Phosphatidylinositol-dependent actin filament binding by the SWI/SNF-like BAF chromatin remodeling complex.
Author(s):
Rando OJ, Zhao K, Janmey P, Crabtree GR
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