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Rando Lab
Home
Research
Overview
Chromatin Structure and Function
Paternal Effect Epigenetics
Lab Members
Publications
Join Us
Contact Us
Donate
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Rando Lab
Home
Research
Overview
Chromatin Structure and Function
Paternal Effect Epigenetics
Lab Members
Publications
Join Us
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BMB Home
Rando Lab
Publications
Total:
displaying 50 out of
84
results
Evidence for RNA or protein transport from somatic tissues to the male reproductive tract in mouse
Mar 27, 2023
Author(s):
Vera Rinaldi,Kathleen Messemer,Kathleen Desevin,Fengyun Sun,Bethany C Berry,Shweta Kukreja,Andrew R Tapper,Amy J Wagers,Oliver J Rando
Source:
eLife
Staying together after the breakup: tRNA halves in extracellular fluids
Feb 13, 2023
Author(s):
Ebru Kaymak,Oliver J Rando
Source:
Proceedings of the National Academy of Sciences of the United States of America
Sperm Energy Restriction and Recovery (SER) Alters Epigenetic Marks during the First Cell Cycle of Development in Mice
Jan 8, 2023
Author(s):
Darya A Tourzani,Qiangzong Yin,Erica A Jackson,Oliver J Rando,Pablo E Visconti,Maria G Gervasi
Source:
International journal of molecular sciences
Mammalian Micro-C-XL
Feb 1, 2022
Author(s):
Nils Krietenstein,Oliver J Rando
Source:
Methods in molecular biology (Clifton, N.J.)
Soma-to-germline RNA communication
Sep 21, 2021
Author(s):
Colin C Conine,Oliver J Rando
Source:
Nature reviews. Genetics
Systematic evaluation of chromosome conformation capture assays
Sep 4, 2021
Author(s):
Betul Akgol Oksuz,Liyan Yang,Sameer Abraham,Sergey V Venev,Nils Krietenstein,Krishna Mohan Parsi,Hakan Ozadam,Marlies E Oomen,Ankita Nand,Hui Mao,Ryan M J Genga,Rene Maehr,Oliver J Rando,Leonid A Mirn...
Source:
Nature methods
Stability of the cytosine methylome during post-testicular sperm maturation in mouse
Mar 4, 2021
Author(s):
Carolina Galan,Ryan W Serra,Fengyun Sun,Vera D Rinaldi,Colin C Conine,Oliver J Rando
Source:
PLoS genetics
Deficient spermiogenesis in mice lacking Rlim
Feb 23, 2021
Author(s):
Feng Wang,Maria Gracia Gervasi,Ana Bošković,Fengyun Sun,Vera D Rinaldi,Jun Yu,Mary C Wallingford,Darya A Tourzani,Jesse Mager,Lihua Julie Zhu,Oliver J Rando,Pablo E Visconti,Lara Strittmatter,Ingolf B...
Source:
eLife
Sperm Head Preparation and Genetic Background Affect Caput Sperm ICSI Embryo Viability: Cauda-Enriched miRNAs Only Essential in Specific Conditions
Dec 22, 2020
Author(s):
Colin C Conine,Fengyun Sun,Lina Song,Jaime A Rivera-Pérez,Oliver J Rando
Source:
Developmental cell
A Role for the Mre11-Rad50-Xrs2 Complex in Gene Expression and Chromosome Organization
Dec 5, 2020
Author(s):
Romain Forey,Antoine Barthe,Mireille Tittel-Elmer,Maxime Wery,Marie-Bénédicte Barrault,Cécile Ducrot,Andrew Seeber,Nils Krietenstein,Ugo Szachnowski,Magdalena Skrzypczak,Krzysztof Ginalski,Maga Rowick...
Source:
Molecular cell
METTL6 is a tRNA m3C methyltransferase that regulates pluripotency and tumor cell growth
Sep 14, 2020
Author(s):
Valentina V Ignatova,Steffen Kaiser,Jessica Sook Yuin Ho,Xinyang Bing,Paul Stolz,Ying Xim Tan,Chee Leng Lee,Florence Pik Hoon Gay,Palma Rico Lastres,Raffaele Gerlini,Birgit Rathkolb,Antonio Aguilar-Pi...
Source:
Science advances
Histone exchange is associated with activator function at transcribed promoters and with repression at histone loci
Sep 12, 2020
Author(s):
Sari Kassem,Paolo Ferrari,Amanda L Hughes,Julien Soudet,Oliver J Rando,Michel Strubin
Source:
Science advances
An atlas of cell types in the mouse epididymis and vas deferens
Jul 31, 2020
Author(s):
Vera D Rinaldi,Elisa Donnard,Kyle Gellatly,Morten Rasmussen,Alper Kucukural,Onur Yukselen,Manuel Garber,Upasna Sharma,Oliver J Rando
Source:
eLife
Mesoscale organization of the chromatin fiber
Apr 20, 2020
Author(s):
Nils Krietenstein,Oliver J Rando
Source:
Current opinion in genetics & development
The rRNA m6A methyltransferase METTL5 is involved in pluripotency and developmental programs
Mar 29, 2020
Author(s):
Valentina V Ignatova,Paul Stolz,Steffen Kaiser,Tobias H Gustafsson,Palma Rico Lastres,Adrián Sanz-Moreno,Yi-Li Cho,Oana V Amarie,Antonio Aguilar-Pimentel,Tanja Klein-Rodewald,Julia Calzada-Wack,Lore B...
Source:
Genes & development
Ultrastructural Details of Mammalian Chromosome Architecture
Mar 28, 2020
Author(s):
Nils Krietenstein,Sameer Abraham,Sergey V Venev,Nezar Abdennur,Johan Gibcus,Tsung-Han S Hsieh,Krishna Mohan Parsi,Liyan Yang,René Maehr,Leonid A Mirny,Job Dekker,Oliver J Rando
Source:
Molecular cell
Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding
Mar 28, 2020
Author(s):
Tsung-Han S Hsieh,Claudia Cattoglio,Elena Slobodyanyuk,Anders S Hansen,Oliver J Rando,Robert Tjian,Xavier Darzacq
Source:
Molecular cell
Early life lessons: The lasting effects of germline epigenetic information on organismal development
Jan 25, 2020
Author(s):
Carolina Galan,Marina Krykbaeva,Oliver J Rando
Source:
Molecular metabolism
Transitions in paternal social status predict patterns of offspring growth and metabolic transcription
Dec 31, 2019
Author(s):
Joseph W Cauceglia,Adam C Nelson,Nimrod D Rubinstein,Shweta Kukreja,Lynsey N Sasso,John A Beaufort,Oliver J Rando,Wayne K Potts
Source:
Molecular ecology
Control of noncoding RNA production and histone levels by a 5' tRNA fragment
Dec 14, 2019
Author(s):
Ana Boskovic,Xin Yang Bing,Ebru Kaymak,Oliver J Rando
Source:
Genes & development
MicroRNAs Absent in Caput Sperm Are Required for Normal Embryonic Development
Jul 3, 2019
Author(s):
Colin C Conine,Fengyun Sun,Lina Song,Jaime A Rivera-Pérez,Oliver J Rando
Source:
Developmental cell
Profiling of Pluripotency Factors in Single Cells and Early Embryos
Apr 9, 2019
Author(s):
Sarah J Hainer,Ana Bošković,Kurtis N McCannell,Oliver J Rando,Thomas G Fazzio
Source:
Cell
tRNA Genes Affect Chromosome Structure and Function via Local Effects
Feb 6, 2019
Author(s):
Omar Hamdani,Namrita Dhillon,Tsung-Han S Hsieh,Takahiro Fujita,Josefina Ocampo,Jacob G Kirkland,Josh Lawrimore,Tetsuya J Kobayashi,Brandon Friedman,Derek Fulton,Kenneth Y Wu,Răzvan V Chereji,Masaya Ok...
Source:
Molecular and cellular biology
Paternal Exercise Improves Glucose Metabolism in Adult Offspring
Oct 23, 2018
Author(s):
Kristin I Stanford,Morten Rasmussen,Lisa A Baer,Adam C Lehnig,Leslie A Rowland,Joseph D White,Kawai So,Ana Luisa De Sousa-Coelho,Michael F Hirshman,Mary-Elizabeth Patti,Oliver J Rando,Laurie J Goodyea...
Source:
Diabetes
Transgenerational Epigenetic Inheritance
Aug 31, 2018
Author(s):
Ana Bošković,Oliver J Rando
Source:
Annual review of genetics
Small RNAs Gained during Epididymal Transit of Sperm Are Essential for Embryonic Development in Mice
Jul 31, 2018
Author(s):
Colin C Conine,Fengyun Sun,Lina Song,Jaime A Rivera-Pérez,Oliver J Rando
Source:
Developmental cell
Small RNAs Are Trafficked from the Epididymis to Developing Mammalian Sperm
Jul 31, 2018
Author(s):
Upasna Sharma,Fengyun Sun,Colin C Conine,Brian Reichholf,Shweta Kukreja,Veronika A Herzog,Stefan L Ameres,Oliver J Rando
Source:
Developmental cell
Effects of Larval Density on Gene Regulation in Caenorhabditis elegans During Routine L1 Synchronization
Apr 1, 2018
Author(s):
Io Long Chan,Oliver J Rando,Colin C Conine
Source:
G3 (Bethesda, Md.)
Rlim-Dependent and -Independent Pathways for X Chromosome Inactivation in Female ESCs
Dec 28, 2017
Author(s):
Feng Wang,Kurtis N McCannell,Ana Bošković,Xiaochun Zhu,JongDae Shin,Jun Yu,Judith Gallant,Meg Byron,Jeanne B Lawrence,Lihua J Zhu,Stephen N Jones,Oliver J Rando,Thomas G Fazzio,Ingolf Bach
Source:
Cell reports
Transcriptome-wide Analysis of Roles for tRNA Modifications in Translational Regulation
Dec 5, 2017
Author(s):
Hsin-Jung Chou,Elisa Donnard,H Tobias Gustafsson,Manuel Garber,Oliver J Rando
Source:
Molecular cell
A synthetic biology approach to probing nucleosome symmetry
Sep 13, 2017
Author(s):
Yuichi Ichikawa,Caitlin F Connelly,Alon Appleboim,Thomas Cr Miller,Hadas Jacobi,Nebiyu A Abshiru,Hsin-Jung Chou,Yuanyuan Chen,Upasna Sharma,Yupeng Zheng,Paul M Thomas,Hsuiyi V Chen,Vineeta Bajaj,Chris...
Source:
eLife
LINE-1 activation after fertilization regulates global chromatin accessibility in the early mouse embryo
Aug 29, 2017
Author(s):
Joanna W Jachowicz,Xinyang Bing,Julien Pontabry,Ana Bošković,Oliver J Rando,Maria-Elena Torres-Padilla
Source:
Nature genetics
Metabolic Inputs into the Epigenome
Mar 9, 2017
Author(s):
Upasna Sharma,Oliver J Rando
Source:
Cell metabolism
Paternal nicotine exposure alters hepatic xenobiotic metabolism in offspring
Feb 15, 2017
Author(s):
Markus P Vallaster,Shweta Kukreja,Xin Y Bing,Jennifer Ngolab,Rubing Zhao-Shea,Paul D Gardner,Andrew R Tapper,Oliver J Rando
Source:
eLife
DNA methylation directs genomic localization of Mbd2 and Mbd3 in embryonic stem cells
Nov 17, 2016
Author(s):
Sarah J Hainer,Kurtis N McCannell,Jun Yu,Ly-Sha Ee,Lihua J Zhu,Oliver J Rando,Thomas G Fazzio
Source:
eLife
Micro-C XL: assaying chromosome conformation from the nucleosome to the entire genome
Nov 8, 2016
Author(s):
Tsung-Han S Hsieh,Geoffrey Fudenberg,Anton Goloborodko,Oliver J Rando
Source:
Nature methods
Regulation of X-linked gene expression during early mouse development by Rlim
Sep 20, 2016
Author(s):
Feng Wang,JongDae Shin,Jeremy M Shea,Jun Yu,Ana Bošković,Meg Byron,Xiaochun Zhu,Alex K Shalek,Aviv Regev,Jeanne B Lawrence,Eduardo M Torres,Lihua J Zhu,Oliver J Rando,Ingolf Bach
Source:
eLife
Dynamics of Nucleosome Positioning Maturation following Genomic Replication
Aug 30, 2016
Author(s):
Pauline Vasseur,Saphia Tonazzini,Rahima Ziane,Alain Camasses,Oliver J Rando,Marta Radman-Livaja
Source:
Cell reports
Intergenerational Transfer of Epigenetic Information in Sperm
Jan 24, 2016
Author(s):
Oliver J Rando
Source:
Cold Spring Harbor perspectives in medicine
Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals
Jan 2, 2016
Author(s):
Upasna Sharma,Colin C Conine,Jeremy M Shea,Ana Boskovic,Alan G Derr,Xin Y Bing,Clemence Belleannee,Alper Kucukural,Ryan W Serra,Fengyun Sun,Lina Song,Benjamin R Carone,Emiliano P Ricci,Xin Z Li,Lucas ...
Source:
Science (New York, N.Y.)
Genetic and Epigenetic Variation, but Not Diet, Shape the Sperm Methylome
Dec 26, 2015
Author(s):
Jeremy M Shea,Ryan W Serra,Benjamin R Carone,Hennady P Shulha,Alper Kucukural,Michael J Ziller,Markus P Vallaster,Hongcang Gu,Andrew R Tapper,Paul D Gardner,Alexander Meissner,Manuel Garber,Oliver J R...
Source:
Developmental cell
Chromatin Dynamics and the RNA Exosome Function in Concert to Regulate Transcriptional Homeostasis
Nov 21, 2015
Author(s):
Mayuri Rege,Vidya Subramanian,Chenchen Zhu,Tsung-Han S Hsieh,Assaf Weiner,Nir Friedman,Sandra Clauder-Münster,Lars M Steinmetz,Oliver J Rando,Laurie A Boyer,Craig L Peterson
Source:
Cell reports
R loops regulate promoter-proximal chromatin architecture and cellular differentiation
Nov 10, 2015
Author(s):
Poshen B Chen,Hsiuyi V Chen,Diwash Acharya,Oliver J Rando,Thomas G Fazzio
Source:
Nature structural & molecular biology
Epigenomics and the structure of the living genome
Oct 3, 2015
Author(s):
Nir Friedman,Oliver J Rando
Source:
Genome research
Comparative Genomics Reveals Chd1 as a Determinant of Nucleosome Spacing in Vivo
Jul 16, 2015
Author(s):
Amanda L Hughes,Oliver J Rando
Source:
G3 (Bethesda, Md.)
Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C
Jun 30, 2015
Author(s):
Tsung-Han S Hsieh,Assaf Weiner,Bryan Lajoie,Job Dekker,Nir Friedman,Oliver J Rando
Source:
Cell
Increased CRF signalling in a ventral tegmental area-interpeduncular nucleus-medial habenula circuit induces anxiety during nicotine withdrawal
Apr 22, 2015
Author(s):
Rubing Zhao-Shea,Steven R DeGroot,Liwang Liu,Markus Vallaster,Xueyan Pang,Qin Su,Guangping Gao,Oliver J Rando,Gilles E Martin,Olivier George,Paul D Gardner,Andrew R Tapper
Source:
Nature communications
I'm eating for two: parental dietary effects on offspring metabolism
Mar 28, 2015
Author(s):
Oliver J Rando,Rebecca A Simmons
Source:
Cell
High-resolution chromatin dynamics during a yeast stress response
Mar 25, 2015
Author(s):
Assaf Weiner,Tsung-Han S Hsieh,Alon Appleboim,Hsiuyi V Chen,Ayelet Rahat,Ido Amit,Oliver J Rando,Nir Friedman
Source:
Molecular cell
Suppression of pervasive noncoding transcription in embryonic stem cells by esBAF
Feb 19, 2015
Author(s):
Sarah J Hainer,Weifeng Gu,Benjamin R Carone,Benjamin D Landry,Oliver J Rando,Craig C Mello,Thomas G Fazzio
Source:
Genes & development
A system for genome-wide histone variant dynamics in ES cells reveals dynamic MacroH2A2 replacement at promoters
Aug 8, 2014
Author(s):
Ozlem Yildirim,Jui-Hung Hung,Ryan J Cedeno,Zhiping Weng,Christopher J Lengner,Oliver J Rando
Source:
PLoS genetics
High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm
Jul 8, 2014
Author(s):
Benjamin R Carone,Jui-Hung Hung,Sarah J Hainer,Min-Te Chou,Dawn M Carone,Zhiping Weng,Thomas G Fazzio,Oliver J Rando
Source:
Developmental cell
Father-son chats: inheriting stress through sperm RNA
Jun 5, 2014
Author(s):
Upasna Sharma,Oliver J Rando
Source:
Cell metabolism
Mechanisms underlying nucleosome positioning in vivo
Apr 8, 2014
Author(s):
Amanda L Hughes,Oliver J Rando
Source:
Annual review of biophysics
Feedback control of Set1 protein levels is important for proper H3K4 methylation patterns
Mar 12, 2014
Author(s):
Luis M Soares,Marta Radman-Livaja,Sherry G Lin,Oliver J Rando,Stephen Buratowski
Source:
Cell reports
A histone acetylation switch regulates H2A.Z deposition by the SWR-C remodeling enzyme
Apr 13, 2013
Author(s):
Shinya Watanabe,Marta Radman-Livaja,Oliver J Rando,Craig L Peterson
Source:
Science (New York, N.Y.)
Painting by numbers: increasing the parts list for chromatin domains
Feb 27, 2013
Author(s):
Hsiuyi V Chen,Oliver J Rando
Source:
Molecular cell
Daddy issues: paternal effects on phenotype
Nov 13, 2012
Author(s):
Oliver J Rando
Source:
Cell
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
Sep 8, 2012
Author(s):
Jie Wang,Jiali Zhuang,Sowmya Iyer,XinYing Lin,Troy W Whitfield,Melissa C Greven,Brian G Pierce,Xianjun Dong,Anshul Kundaje,Yong Cheng,Oliver J Rando,Ewan Birney,Richard M Myers,William S Noble,Michael...
Source:
Genome research
A functional evolutionary approach to identify determinants of nucleosome positioning: a unifying model for establishing the genome-wide pattern
Aug 14, 2012
Author(s):
Amanda L Hughes,Yi Jin,Oliver J Rando,Kevin Struhl
Source:
Molecular cell
A key role for Chd1 in histone H3 dynamics at the 3' ends of long genes in yeast
Jul 19, 2012
Author(s):
Marta Radman-Livaja,Tiffani K Quan,Lourdes Valenzuela,Jennifer A Armstrong,Tibor van Welsem,Taesoo Kim,Laura J Lee,Stephen Buratowski,Fred van Leeuwen,Oliver J Rando,Grant A Hartzog
Source:
PLoS genetics
Rewriting the epigenome
Jun 26, 2012
Author(s):
Benjamin R Carone,Oliver J Rando
Source:
Cell
NURDs are required for diversity
May 15, 2012
Author(s):
Thomas G Fazzio,Oliver J Rando
Source:
The EMBO journal
Genome-wide identification and characterization of replication origins by deep sequencing
Apr 26, 2012
Author(s):
Jia Xu,Yoshimi Yanagisawa,Alexander M Tsankov,Christopher Hart,Keita Aoki,Naveen Kommajosyula,Kathleen E Steinmann,James Bochicchio,Carsten Russ,Aviv Regev,Oliver J Rando,Chad Nusbaum,Hironori Niki,Pa...
Source:
Genome biology
Combinatorial complexity in chromatin structure and function: revisiting the histone code
Mar 24, 2012
Author(s):
Oliver J Rando
Source:
Current opinion in genetics & development
Chromatin and transcription in yeast
Feb 21, 2012
Author(s):
Oliver J Rando,Fred Winston
Source:
Genetics
Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells
Dec 27, 2011
Author(s):
Ozlem Yildirim,Ruowang Li,Jui-Hung Hung,Poshen B Chen,Xianjun Dong,Ly-Sha Ee,Zhiping Weng,Oliver J Rando,Thomas G Fazzio
Source:
Cell
Genome-wide measurement of histone H3 replacement dynamics in yeast
Aug 25, 2011
Author(s):
Oliver J Rando
Source:
Methods in molecular biology (Clifton, N.J.)
Patterns and mechanisms of ancestral histone protein inheritance in budding yeast
Jun 14, 2011
Author(s):
Marta Radman-Livaja,Kitty F Verzijlbergen,Assaf Weiner,Tibor van Welsem,Nir Friedman,Oliver J Rando,Fred van Leeuwen
Source:
PLoS biology
Dynamics of Sir3 spreading in budding yeast: secondary recruitment sites and euchromatic localization
Feb 22, 2011
Author(s):
Marta Radman-Livaja,Giulia Ruben,Assaf Weiner,Nir Friedman,Rohinton Kamakaka,Oliver J Rando
Source:
The EMBO journal
Global regulation of H2A.Z localization by the INO80 chromatin-remodeling enzyme is essential for genome integrity
Jan 19, 2011
Author(s):
Manolis Papamichos-Chronakis,Shinya Watanabe,Oliver J Rando,Craig L Peterson
Source:
Cell
Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals
Dec 25, 2010
Author(s):
Benjamin R Carone,Lucas Fauquier,Naomi Habib,Jeremy M Shea,Caroline E Hart,Ruowang Li,Christoph Bock,Chengjian Li,Hongcang Gu,Phillip D Zamore,Alexander Meissner,Zhiping Weng,Hans A Hofmann,Nir Friedm...
Source:
Cell
Genome-wide mapping of nucleosomes in yeast
Oct 16, 2010
Author(s):
Oliver J Rando
Source:
Methods in enzymology
Chromatin as a potential carrier of heritable information
Mar 20, 2010
Author(s):
Paul D Kaufman,Oliver J Rando
Source:
Current opinion in cell biology
Replication and active demethylation represent partially overlapping mechanisms for erasure of H3K4me3 in budding yeast
Feb 9, 2010
Author(s):
Marta Radman-Livaja,Chih Long Liu,Nir Friedman,Stuart L Schreiber,Oliver J Rando
Source:
PLoS genetics
Chromatin 'programming' by sequence--is there more to the nucleosome code than %GC?
Jan 14, 2010
Author(s):
Amanda Hughes,Oliver J Rando
Source:
Journal of biology
Nucleosome positioning: how is it established, and why does it matter?
Jun 17, 2009
Author(s):
Marta Radman-Livaja,Oliver J Rando
Source:
Developmental biology
Genome-wide views of chromatin structure
Mar 26, 2009
Author(s):
Oliver J Rando,Howard Y Chang
Source:
Annual review of biochemistry
Evolution in a test tube: the hatchet before the scalpel
Dec 2, 2008
Author(s):
Oliver J Rando
Source:
Cell
Rules and regulation in the primary structure of chromatin
May 1, 2007
Author(s):
Oliver J Rando,Kami Ahmad
Source:
Current opinion in cell biology
Timescales of genetic and epigenetic inheritance
Feb 27, 2007
Author(s):
Oliver J Rando,Kevin J Verstrepen
Source:
Cell
Global patterns of histone modifications
Feb 24, 2007
Author(s):
Oliver J Rando
Source:
Current opinion in genetics & development
Chromatin structure in the genomics era
Dec 26, 2006
Author(s):
Oliver J Rando
Source:
Trends in genetics : TIG
Distinct pathways for snoRNA and mRNA termination
Dec 13, 2006
Author(s):
Minkyu Kim,Lidia Vasiljeva,Oliver J Rando,Alexander Zhelkovsky,Claire Moore,Stephen Buratowski
Source:
Molecular cell
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Paternal Effect Epigenetics
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