Publications

DEBrowser: interactive differential expression analysis and visualization tool for count data.
Saturday, January 5, 2019
Author(s): A Kucukural, O Yukselen, DM Ozata, MJ Moore , M Garber
Source: BMC Genomics 

Comparative Analysis of Immune Cells Reveals a Conserved Regulatory Lexicon
Wednesday, March 28, 2018
Authors: Elisa Donnard, Pranitha Vangala, Shaked Afik, Sean M. McCauley, Anetta Nowosielska, et al.
Source: Cell Systems

GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases
Monday, May 15, 2017
Authors: Lihua Julie Zhu, Michael Lawrence, Ankit Gupta, Herve Pages, Alper Kucukural, et al.
Source: BMC Genomics

Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals
Friday, January 22, 2016
Author(s): U Sharma, CC Conine, JM Shea, A Boskovic, AG Derr, XY Bing, ...
Source: Science

Genetic and epigenetic variation, but not diet, shape the sperm methylome
Monday, December 21, 2015
Author(s): JM Shea, RW Serra, BR Carone, HP Shulha, A Kucukural, MJ Ziller, ...
Source: Developmental cell 

Novel Observations from Next Generation RNA Sequencing of Highly Purified Human Adult and Fetal Islet Cell Subsets
Tuesday, September 1, 2015
Author(s): DM Blodgett, A Nowosielska, S Afik, S Pechhold, AJ Cura, NJ Kennedy, ...
Source: Diabetes

Simultaneous generation of many RNA-seq libraries in a single reaction
Wednesday, April 1, 2015
Author(s): AA Shishkin, G Giannoukos, A Kucukural, D Ciulla, M Busby, C Surka, ...
Source: Nature methods

The Cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus
Friday, November 9, 2012
Authors: Guramrit Singh, Alper Kucukural, Can Cenik, John D. Leszyk, Scott A. Shaffer, et al.
Source: Cell