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ZLab Publications 2016

Tsuji J, Weng Z.(2016) 
DNApi: A De Novo Adapter Prediction Algorithm for Small RNA Sequencing Data. 
Plos One Oct 13;11(10):e0164228.doi: 10.1371/journal.pone.0162228. eCollection. (PMCID: PMC5063419)

Henssen AG, Jiang E, Zhuang J, Pinello L, Socci ND, Koche R, Gonen M, Villasante CM, Armstrong SA, Bauer DE, Weng Z, Kentsis A. (2016) 
Forward genetic screen of human transposase genomic rearrangements
BMC Genomics Aug 4;17:548. doi: 10.1186/s12864-016-2877-x. (PMCID: PMC4973553).

Labadorf A, Hoss AG, Lagomarsino V, Latourelle JC, Hadzi TC, Bregu J, MacDonald ME, Gusella JF, Chen JF, Akbarian S, Weng Z, Myers RH. (2016)
Correction: RNA Sequence Analysis of Human Huntington Disease Brain Reveals an Extensive Increase in Inflammatory and Developmental Gene Expression.
PLos One Jul 25;11(7):e0160295. doi: 10.1371/journal.pone.0160295. (PMCID: PMC4959683) [his corrects article DOI: 10.1371/journal.pone.0143563].

Filiano AJ, Xu Y, Tustison NJ, Marsh RL, Baker W, Smirnov I, Weng Z, et al. (2016)
Unexpected role of interferon-ү in regulating neuronal connectivity and social behavior.
Nature Jul 21;535(7612):425-9. (PMCID: PMC4961620).

Bohnuud T, Luo L, Wodak SJ, Bonvin AM, Weng Z, Vajda S, Schueler-Furman O, Kozakov D. (2016)
A benchmark testing ground for integrating homology modeling and protein docking.
Proteins May 12. doi: 10.1002/prot.25063. [Epub ahead of print].

Lensik MF, Velankar S, Kryshtafovych A, Vreven T, Pierce BG, Borrman TM, Weng Z., et al. (2016)
Prediction of homo-and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment.
Proteins 2016 Apr 28. doi: 10.1002/prot.25007. (PMID:27122118) [PubMed – as supplied by publisher].

Riley TP, Singh NK, Pierce BG, Baker BM, Weng Z. (2016)
Computational Reprogramming of T Cell Antigen Receptor Binding Properties.
Methods Mol Biol. 2016;1414:305-18. doi: 10.1007/978-1-4939-3569-7_18. (PMID:27094299).

Riley TP, Singh NK, Pierce BG, Weng Z, Baker BM. (2016) 
Computational Modeling of T Cell Receptor Complexes
Methods Mol Biol. 2016; 1414:319-40. (PMID:27094300).

Yin H, Song CQ, Dorkin JR, Zhu LJ, Li Y, Wu Q, Park A, Yang J, Suresh S, Bizhanova A, Gupta A, Bolukbasi MF, Walsh S, Bogorad RL, Gao G, Weng ZDong Y, Koteliansky V, Wolfe SA, Langer R, Xue W, Anderson DG. (2016) 
Therapeutic genome editing by combined viral and non-viral delivery CRISPR system components in vivo. 
Nat Biotechnol Mar;34(3):328-33. doi: 10.1038/nbt.3471. Epub 2016 Feb 1 (PMID: 26829318).

Blevins SJ, Pierce BG, Singh NK, Riley TP, Wang Y, Spear TT, Nishimura MI, Weng Z, Baker BM. (2016) 
How structural adaptability exists alongside HLA-A2 bias in the human αβ TCR repertoire. 
Proc Natl Acad Sci USAMar 1;113(9):E1276-85. doi: 10.1073/pnas.1522069113. (PMCID: PMC4780628).

Tang W, Tu S, Lee HC, Weng ZMello CC. (2016) 
The RNase PARN-1 Trims piRNA 3’ Ends to Promote Transcriptome Surveillance in C. elegans. 
Cell Feb 25;164(5):9974-84. doi: 10.1016/j.cell.2016.02.008. (PMCID: PMC4785802).