Publications 2013

Chen PB, Hung JH, Hickman TL, Coles AH, Carey JF, Weng Z, Chu F, Fazzio TG. (2013) 
Hdac6 regulates Tip60-p400 function in stem cells. 
eLifeDec 3:e01557.doi: 10.7554/eLife.01557. (PMCID: PMC3843111).

Lensink MF, Moal IH, Bates PA, Kastritis PL, Pierce BGHwang HVreven TWeng Zet. al. (2013) 
Blind prediction of interfacial water positions in CAPRI. 
Proteins Oct 23. doi: 10.1002/prot.24439. (PMCID: PMC4582081).

Vreven TPierce BGHwang HWeng Z. (2013) 
Performance of ZDOCK in CAPRI rounds 20–26. 
Proteins Oct 3. doi: 10.1002/prot.24432. (PMCID: PMC3975700).

Shulha HP, Cheung I, Guo Y, Akbarian S+ and Weng Z+. (2013)  
Coordinated Cell Type-Specific Epigenetic Remodeling in Prefrontal Cortex Begins before Birth and Continues into
Early Adulthood. 

PLoS GenetData  Apr;9(4):e1003433. (PMCID: PMC3623761) +Co-corresponding authors.

Perrat PN, DasGupta S, Wang J, Theurkauf W, Weng Z, Rosbash M and Waddell S. (2013) 
Transposition-driven genomic heterogeneity in the Drosophila brain.
Science. Apr 5;340(6128):91-5. (PMCID: PMC3887341).

Dong X and Weng Z (2013) 
The correlation between histone modifications and gene expression. 
Epigenomics.  Apr;5(2):113-6. (PMCID: PMC4230708).

Li XZ*, Roy CK*, Dong X, Bolcun-Filas E, Wang J, Han BW, Xu J, Moore MJ, Schimenti JC, Weng Z+ and Zamore PD+. (2013) 
An Ancient Transcription Factor Initiates the Burst of piRNA Production during Early Meiosis in Mouse Testes. 
Mol Cell Apr 11;50(1):67-81. (PMCID: PMC3671569) 
*Joint first authors.  +Co-corresponding authors.

Pierce BG, Eberwine R, Noble JA, Habib M, Shulha HPWeng Z, Blankenhorn EP, Mordes JP. (2013) 
The Missing Heritability in T1D and Potential New Targets for Prevention. 
J Diabetes Res 2013:737485. doi: 10.1155/2013/737485. (PMCID: PMC3647582).

Hwang HVreven TWeng Z (2013) 
Binding interface prediction by combining protein–protein docking results. 
Proteins (2014) Jan;82(1):57-66. doi: 10.1002/prot.24354. Epub 2013 Aug 31. (PMCID: PMC3936310).

Zhang L, Zhang Z, Weng Z (2013)
Rapid reassortment of internal genes in avian influenza A(H7N9) virus.
Clin. Infect. Dis. 2013 Oct; 57(7):1059-61.

Zhang L, Zhang Z, Weng Z, Shi W (2013)
Substitution rates of the internal genes in the novel avian H7N9 influenza virus.
Clin. Infect. Dis. 2013 Oct; 57(8):1213-5.

Moretti R, Fleishman SJ, Pierce BG, Hwang H, Vreven T, Weng (2013) 
Community-wide evaluation of methods for predicting the effect of mutations on protein–protein interactions. 
Proteins Nov; 81(11):1980-7. doi: 10.1002/prot.24356. Epub 2013 Aug 23. (PMCID: PMC4143140).

Vreven T*, Hwang H*, Pierce BGWeng Z (2013) 
Evaluating template-based and template-free protein–protein complex structure prediction. 
Brief BioinformJul 1. Epub ahead of print (PMCID: PMC3957070) *Joint first authors.

Vreven THwang HWeng Z. (2013) 
Exploring Angular Distance in Protein-Protein Docking Algorithms. 
PLoS OneFeb;8(2):e56645: doi. 10.1371/journal.pone.0056645. (PMCID: PMC3578925).

Wang J*, Zhuang J*, Iyer S*, Lin XY*, Greven MC*, Kim BHMoore JPierce BGDong XVirgil D, Birney E, Hung JH and Weng Z. (2013) a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium. 
Nucleic Acids Res. Jan;41(Database issue):D171-6. (PMCID: PMC3531197) *Joint first authors.

Tu S, Pederson T+, and Weng Z+. (2013) 
Networking development by Boolean logic.  
Nucleus Feb 14;4(2) (PMCID: PMC3621749) +Co-corresponding authors.

Pierce BG and Weng Z. (2013) 
A flexible docking approach for prediction of T cell receptor-peptide-MHC complexes.  
Protein Sci. Jan;22(1):35-46 (PMCID:PMC3575858).