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Rivera-Pérez, J. A., Jones, V. and Tam P. P. L. (2010). Culture of whole mouse embryos at early post-implantation stages: developmental staging and methods. Methods Enzymol. 476:185-203. Co-corresponding author. PMID: 20691867.

Xie, R., Medina, R., Zhang, Y., Hussain, S., Colby, J., Ghule, P., Sundararajan, S., Keeler, M., Liu, L-J., Van der Deen, M., Mitra, P., Lian, J. B., Rivera-Pérez, J. A.,Jones, S., Stein, J. L., Van Wijnen, A. J. and Stein, G. (2009). The Histone gene activator HINP is a nonredundant cyclin E/CDK2 effector during early embryonic cell cycles. Proc. Natl. Acad. Sci. 106:12359-64.
PMID: 19590016.

Cowley, D. O., Rivera-Pérez, J. A.,Schliekelman, M., He, Y. J., Oliver, T. G., Lu, L., O’Quinn, R., Salmon, E. D., Magnuson, T. and Van Dyke, T. (2009). Aurora-A kinase is essential for bipolar spindle formation and early development. Mol. Cell. Biol. 29, 1059-1071. PMID:19075002.

Rivera-Pérez, J. A. (2007). Axial specification in mice: Ten years of advances and controversies. J. Cell. Physiol. 213, 654-660. PMID:17893928.

Rivera-Pérez, J. A. Diefes, H. and Magnuson, T (2007). A simple method for parietal yolk sac removal in early post-implantation mouse embryos. Dev. Dynamics 236, 489-493. PMID:17143861.

Rivera-Pérez, J. A. and Magnuson T. (2005). Primitive streak formation in mice is preceded by localized activation of Brachyury and Wnt3. Dev. Biol. 288, 363-371. PMID:16289026.

Abell, A. N., Rivera-Pérez, J. A.,Cuevas, B. D., Uhlik, M. T., Sather, S., Johnson, N. L., Minton, S. K., Lauder, J. M., Morrison, J. A., Showell, C., Conlon, F. L., Godfrey, V. L., Magnuson, T., Vaillancourt, R. R., Heasley, L. E. and Johnson, G. L. (2005). Ablation of MEKK4 kinase activity causes neurulation and skeletal patterning defects in the mouse embryo. Mol. Cell. Biol. 20, 8948-8959. PMID:16199873.

Rivera-Pérez, J. A., Mager, J. and Magnuson, T. (2003). Dynamic morphogenetic events characterize the mouse visceral endoderm. Dev. Biol. 270, 470-487.PMID:14499654.

Camus, A., Davidson, B. P., Billiards, S., Khoo, P-L., Rivera-Pérez, J. A.,Wakamiya, M., Behringer, R. R. and Tam, P. P. L. (2000). The morphogenetic role of the midline mesendoderm and ectoderm in the development of the forebrain and the midbrain of the mouse embryo. Development 127, 1799-1813. PMID:10751169.

Rivera-Pérez, J. A.,Wakamiya, M. and Behringer, R. R. (1999). Gossecoid acts cell-autonomously in mesenchyme-derived tissues during craniofacial development. Development 126, 3811-3821. PMID: 10433910.

Wakamiya, M., Lindsay, E. A., Rivera-Pérez, J. A., Baldini, A. and Behringer, R. R. (1998). Functional analysis of Gscl in the pathogenesis of the DiGeorge and Velocardiofacial syndromes. Amer. J. Hum. Genet. 7, 1835-1840. PMID:9811926.

Wakamiya, M., Rivera-Pérez, J. A., Baldini, A. and Behringer, R.R. (1997). Goosecoid and Goosecoid related genes in mouse embryogenesis. Cold Spring Harb. Symp. Quant. Biol. 62, 145-149. PMID: 9598346.

Filosa, S., Rivera-Pérez, J. A.,Perea-Gómez, A., Gansmuller, A., Sasaki, H., Behringer, R. R. and Ang S.-L. (1997) Goosecoid and HNF3-b genetically interact to regulate neural tube patterning during mouse embryogenesis. Development 124, 2843-2854. PMID:9226455.

Rivera-Pérez, J. A.;Mallo, M.; Gendron-Maguire, M.; Gridley, T. and Behringer, R. R. (1995). Goosecoid is not an essential component of the mouse gastrula organizer but is required for craniofacial and rib development. Development 121, 3005-3012. PMID:7555726.

Hasty, P., Rivera-Pérez J. A. and Bradley A. (1995). Gene conversion during vector insertion in embryonic stem cells. Nucl. Acids Res. 23, 2058-2064. PMID:7596837.

Rivera-Pérez, J. A., Rojas-Martínez, A., Charles-García, F. and Barrera-Saldaña, H. A. (1993). Analisis molecular de la hemofilia en familias del noreste de México. Rev. Inv. Clin. 45, 23-28. PMID: 8097893.

O'Neal, W. K.; Hasty, P.; Mc Gray, P. B.; Casey, B.; Rivera-Pérez, J. A.;Welsh, M. J.; Beaudet, A. L. and Bradley, A. (1993). A severe phenotype in mice with a duplication of exon 3 in the cystic fibrosis locus. Hum. Mol. Genet. 2, 1561-1569. PMID: 7505691.

Hasty, P., Rivera-Pérez, J. A. and Bradley, A. (1992). The role and fate of DNA ends for homologous recombination in embryonic stem cells. Mol. Cell. Biol. 12, 2464-2474. PMID:1588950.

Ramírez-Solis, R., Rivera-Pérez, J. A., Wallace, J. D., Wims, M. and Bradley, A. (1992). Genomic DNA microextraction: A method to screen numerous samples. Anal. Biochem. 201, 331-335. PMID: 1632522.

Hasty, P., Rivera-Pérez, J. A. and Bradley, A. (1991). The length of homology required for gene targeting in embryonic stem cells. Mol. Cell. Biol. 11, 5586-5591. PMID:1656234.

Hasty, P., Rivera-Pérez, J. A.,Chang, C., and Bradley, A. (1991). Target frequency and integration pattern for insertion and replacement vectors in embryonic stem cells. Mol.Cell. Biol. 11, 4509-4517.PMID: 1875936.