Local Resources (Zlab)

Protein Structure Tools

K2 a genetic algorithm-based protein structure alignment tool
FAST a newer protein structure alignment tool, based on graph theory
SMM a matrix-based algorithm for predicting peptides binding to Major Histocompatibility Complex

Protein Docking Tools

ZDOCK rigid-body protein-protein docking software, using a Fast Fourier Transform search algorithm
RDOCK a refinement method to minimize energy and re-rank ZDOCK predictions
Docking Benchmark a large set of test cases for evaluating the performance of docking algorithms
ZDOCK Conv3D ZDOCK optimized with a new convolution library, resulting in improved speed and less memory usage
ZDOCK Server an automated server for running ZDOCK, with capabilities for blocking and filtering contact residues