Selected Publications 2008 - 2010

bullet Hübner A, Cavanagh-Kyros J, Rincon M, Flavell RA, Davis RJ.

Functional cooperation of the proapoptotic Bcl2 family proteins Bmf and Bim in vivo.

Mol Cell Biol. 2010 Jan;30(1):98-105.

 bullet Claycomb JM, Batista PJ, Pang KM, Gu W, Vasale JJ, van Wolfswinkel JC, Chaves DA, Shirayama M, Mitani S, Ketting RF, Conte D Jr, Mello CC.

The Argonaute CSR-1 and its 22G-RNA cofactors are required for holocentric chromosome segregation.

Cell. 2009 Oct 2;139(1):123-34.

 bullet Gu W, Shirayama M, Conte D Jr, Vasale J, Batista PJ, Claycomb JM, Moresco JJ, Youngman EM, Keys J, Stoltz MJ, Chen CC, Chaves DA, Duan S, Kasschau KD, Fahlgren N, Yates JR 3rd, Mitani S, Carrington JC, Mello CC.

Distinct argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline.

Mol Cell. 2009 Oct 23;36(2):231-44. Epub 2009 Oct 1.

 bullet Sinha M, Watanabe S, Johnson A, Moazed D, Peterson CL.

Recombinational repair within heterochromatin requires ATP-dependent chromatin remodeling.

Cell. 2009 Sep 18;138(6):1109-21.

bullet Ko HJ, Zhang Z, Jung DY, Jun JY, Ma Z, Jones KE, Chan SY, Kim JK.

Nutrient stress activates inflammation and reduces glucose metabolism by suppressing AMP-activated protein kinase in the heart.

Diabetes. 2009 Nov;58(11):2536-46. Epub 2009 Aug 18.

bullet Standen CL, Kennedy NJ, Flavell RA, Davis RJ.

Signal transduction cross talk mediated by Jun N-terminal kinase-interacting protein and insulin receptor substrate scaffold protein complexes.

Mol Cell Biol. 2009 Sep;29(17):4831-40. Epub 2009 Jun 29.

 bullet Morel C, Carlson SM, White FM, Davis RJ.

Mcl-1 integrates the opposing actions of signaling pathways that mediate survival and apoptosis.

Mol Cell Biol. 2009 Jul;29(14):3845-52. Epub 2009 May 11.

bullet Oza P, Jaspersen SL, Miele A, Dekker J, Peterson CL.

Mechanisms that regulate localization of a DNA double-strand break to the nuclear periphery.

Genes Dev. 2009 Apr 15;23(8):912-27.

 bullet Grove CA, De Masi F, Barrasa MI, Newburger DE, Alkema MJ, Bulyk ML, Walhout AJ.

A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors.

Cell. 2009 Jul 23;138(2):314-27.

 bullet Das M, Sabio G, Jiang F, Rincón M, Flavell RA, Davis RJ.

Induction of hepatitis by JNK-mediated expression of TNF-alpha.

Cell. 2009 Jan 23;136(2):249-60.

 bullet Hearn EM, Patel DR, Lepore BW, Indic M, van den Berg B.

Transmembrane passage of hydrophobic compounds through a protein channel wall.

Nature. 2009 Mar 19;458(7236):367-70. Epub 2009 Feb 1.

bullet Aouadi M, Tesz GJ, Nicoloro SM, Wang M, Chouinard M, Soto E, Ostroff GR, Czech MP.

Orally delivered siRNA targeting macrophage Map4k4 suppresses systemic inflammation.

Nature. 2009 Apr 30;458(7242):1180-4.



 bullet Csankovszki G, Collette K, Spahl K, Carey J, Snyder M, Petty E, Patel U, Tabuchi T, Liu H, McLeod I, Thompson J, Sarkesik A, Yates J, Meyer BJ, Hagstrom K.
Three distinct condensin complexes control C. elegans chromosome dynamics.
Curr Biol. 2009 Jan 13;19(1):9-19.; PM ID: 19119011 [PubMed - in process]

bullet Benoit B, He CH, Zhang F, Votruba SM, Tadros W, Westwood JT, Smibert CA, Lipshitz HD, Theurkauf WE.
An essential role for the RNA-binding protein Smaug during the Drosophila maternal-to-zygotic transition.
Development. 2009 Mar;136(6):923-32. PMID: 19234062 [PubMed - in process]

bullet Sivaram MV, Wadzinski TL, Redick SD, Manna T, Doxsey SJ.
Dynein light intermediate chain 1 is required for progress through the spindle assembly checkpoint.
EMBO J. 2009 Feb 19. [Epub ahead of print] PMID: 19229290 [PubMed - as supplied by publisher]

bullet Chen CT, Doxsey S.
A last-minute rescue of trapped chromatin.
Cell. 2009 Feb 6;136(3):397-9. PMID: 19203574 [PubMed - indexed for MEDLINE]

bullet Hammell M, Long D, Zhang L, Lee A, Carmack CS, Han M, Ding Y, Ambros V.
mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts.
Nat Methods. 2008 Sep;5(9):813-9.PMID: 19160516 [PubMed - indexed for MEDLINE]

bullet Pazour GJ, Bloodgood RA.
Chapter 5 targeting proteins to the ciliary membrane.
Curr Top Dev Biol. 2008;85:115-49.PMID: 19147004 [PubMed - in process]

bullet Usami Y, Popov S, Popova E, Inoue M, Weissenhorn W, G Göttlinger H.
The ESCRT pathway and HIV-1 budding.
Biochem Soc Trans. 2009 Feb;37(Pt 1):181-4.PMID: 19143627 [PubMed - indexed for MEDLINE]

bullet Burns DM, Richter JD.
CPEB regulation of human cellular senescence, energy metabolism, and p53 mRNA translation.
Genes Dev. 2008 Dec 15;22(24):3449-60.PMID: 19141477 [PubMed - indexed for MEDLINE]

bullet Richter JD, Klann E.
Making synaptic plasticity and memory last: mechanisms of translational regulation.
Genes Dev. 2009 Jan 1;23(1):1-11. Review.PMID: 19136621 [PubMed - indexed for MEDLINE]

bullet Duenas-Decamp MJ, Peters P, Burton D, Clapham PR.
Determinants flanking the CD4 binding loop modulate macrophage-tropism of HIV-1 R5 envelopes.
J Virol. 2009 Jan 7. [Epub ahead of print] PMID: 19129457 [PubMed - as supplied by publisher]

bullet Amcheslavsky A, Jiang J, Ip YT.
Tissue damage-induced intestinal stem cell division in Drosophila.
Cell Stem Cell. 2009 Jan 9;4(1):49-61.PMID: 19128792 [PubMed - indexed for MEDLINE]

bullet Follit JA, San Agustin JT, Xu F, Jonassen JA, Samtani R, Lo CW, Pazour GJ.
The Golgin GMAP210/TRIP11 anchors IFT20 to the Golgi complex.
PLoS Genet. 2008 Dec;4(12):e1000315. Epub 2008 Dec 26.PMID: 19112494 [PubMed - indexed for MEDLINE]

bullet Repik A, Clapham PR.
Plugging gp120s cavity.
Structure. 2008 Nov 12;16(11):1603-4. PMID: 19000812 [PubMed - indexed for MEDLINE]

bullet Jonassen JA, San Agustin J, Follit JA, Pazour GJ.
Deletion of IFT20 in the mouse kidney causes misorientation of the mitotic spindle and cystic kidney disease.
J Cell Biol. 2008 Nov 3;183(3):377-84.PMID: 18981227 [PubMed - indexed for MEDLINE]

bullet Leonard D, Hayakawa A, Lawe D, Lambright D, Bellve KD, Standley C, Lifshitz LM, Fogarty KE, Corvera S.
Sorting of EGF and transferrin at the plasma membrane and by cargo-specific signaling to EEA1-enriched endosomes.
J Cell Sci. 2008 Oct 15;121(Pt 20):3445-58. Epub 2008 Sep 30.PMID: 18827013 [PubMed - indexed for MEDLINE]

bullet Ow MC, Martinez NJ, Olsen PH, Silverman HS, Barrasa MI, Conradt B, Walhout AJ, Ambros V.
The FLYWCH transcription factors FLH-1, FLH-2, and FLH-3 repress embryonic expression of microRNA genes in C. elegans.
Genes Dev. 2008 Sep 15;22(18):2520-34.PMID: 18794349 [PubMed - indexed for MEDLINE]

bullet Gealekman O, Burkart A, Chouinard M, Nicoloro SM, Straubhaar J, Corvera S.
Enhanced angiogenesis in obesity and in response to PPARgamma activators through adipocyte VEGF and ANGPTL4 production.
Am J Physiol Endocrinol Metab. 2008 Nov;295(5):E1056-64. Epub 2008 Aug 26.PMID: 18728224 [PubMed - indexed for MEDLINE]

bullet Zearfoss NR, Alarcon JM, Trifilieff P, Kandel E, Richter JD.
A molecular circuit composed of CPEB-1 and c-Jun controls growth hormone-mediated synaptic plasticity in the mouse hippocampus.
J Neurosci. 2008 Aug 20;28(34):8502-9.PMID: 18716208 [PubMed - indexed for MEDLINE

bullet Hammell M, Long D, Zhang L, Lee A, Carmack CS, Han M, Ding Y, Ambros V.
mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts.
Nat Methods. 2008 Sep;5(9):813-819. Epub 2008 Aug 17.PMID: 18711361 [PubMed - as supplied by publisher]

bullet Swingler S, Zhou J, Swingler C, Dauphin A, Greenough T, Jolicoeur P, Stevenson M.
Evidence for a pathogenic determinant in HIV-1 Nef involved in B cell dysfunction in HIV/AIDS.
Cell Host Microbe. 2008 Jul 17;4(1):63-76. PMID: 18621011 [PubMed - indexed for MEDLINE]

bullet Biswas S, Mohammad MM, Movileanu L, van den Berg B.
Crystal structure of the outer membrane protein OpdK from Pseudomonas aeruginosa.
Structure. 2008 Jul;16(7):1027-35.PMID: 18611376 [PubMed - indexed for MEDLINE]

bullet Batista PJ, Ruby JG, Claycomb JM, Chiang R, Fahlgren N, Kasschau KD, Chaves DA, Gu W, Vasale JJ, Duan S, Conte D Jr, Luo S, Schroth GP, Carrington JC, Bartel DP, Mello CC.
PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans.
Mol Cell. 2008 Jul 11;31(1):67-78. Epub 2008 Jun 19.PMID: 18571452 [PubMed - indexed for MEDLINE]

bullet Sinha M, Peterson CL.
A Rad51 presynaptic filament is sufficient to capture nucleosomal homology during recombinational repair of a DNA double-strand break.
Mol Cell. 2008 Jun 20;30(6):803-10.PMID: 18570881 [PubMed - indexed for MEDLINE]

bullet Hearn EM, Patel DR, van den Berg B.
Outer-membrane transport of aromatic hydrocarbons as a first step in biodegradation.
Proc Natl Acad Sci U S A. 2008 Jun 24;105(25):8601-6. Epub 2008 Jun 16.PMID: 18559855 [PubMed - indexed for MEDLINE]

bullet Yao X, Chen X, Cottonham C, Xu L.
Preferential utilization of Imp7/8 in nuclear import of Smads.
J Biol Chem. 2008 Aug 15;283(33):22867-74. Epub 2008 Jun 2.PMID: 18519565 [PubMed - indexed for MEDLINE]

bullet Puri V, Ranjit S, Konda S, Nicoloro SM, Straubhaar J, Chawla A, Chouinard M, Lin C, Burkart A, Corvera S, Perugini RA, Czech MP.
Cidea is associated with lipid droplets and insulin sensitivity in humans.
Proc Natl Acad Sci U S A. 2008 Jun 3;105(22):7833-8. Epub 2008 May 28.PMID: 18509062 [PubMed - indexed for MEDLINE]

bullet Sharova N, Wu Y, Zhu X, Stranska R, Kaushik R, Sharkey M, Stevenson M.
Primate lentiviral Vpx commandeers DDB1 to counteract a macrophage restriction.
PLoS Pathog. 2008 May 2;4(5):e1000057.PMID: 18451984 [PubMed - indexed for MEDLINE]

bullet Hagan GN, Lin Y, Magnuson MA, Avruch J, Czech MP.
A Rictor-Myo1c complex participates in dynamic cortical actin events in 3T3-L1 adipocytes.
Mol Cell Biol. 2008 Jul;28(13):4215-26. Epub 2008 Apr 21.PMID: 18426911 [PubMed - indexed for MEDLINE]

bullet Guilherme A, Virbasius JV, Puri V, Czech MP.
Adipocyte dysfunctions linking obesity to insulin resistance and type 2 diabetes.
Nat Rev Mol Cell Biol. 2008 May;9(5):367-77. Review.PMID: 18401346 [PubMed - indexed for MEDLINE]

bullet Mukhopadhyay A, Deplancke B, Walhout AJ, Tissenbaum HA.
Chromatin immunoprecipitation (ChIP) coupled to detection by quantitative real-time PCR to study transcription factor binding to DNA in Caenorhabditis elegans.
Nat Protoc. 2008;3(4):698-709.PMID: 18388953 [PubMed - indexed for MEDLINE]

bullet Duenas-Decamp MJ, Peters P, Burton D, Clapham PR.
Natural resistance of human immunodeficiency virus type 1 to the CD4bs antibody b12 conferred by a glycan and an arginine residue close to the CD4 binding loop.
J Virol. 2008 Jun;82(12):5807-14. Epub 2008 Apr 2.PMID: 18385254 [PubMed - indexed for MEDLINE]

bullet Soto ER, Ostroff GR.
Characterization of multilayered nanoparticles encapsulated in yeast cell wall particles for DNA delivery.
Bioconjug Chem. 2008 Apr;19(4):840-8. Epub 2008 Apr 1. PMID: 18376856 [PubMed - indexed for MEDLINE]

bullet Noyes MB, Meng X, Wakabayashi A, Sinha S, Brodsky MH, Wolfe SA.
A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system.
Nucleic Acids Res. 2008 May;36(8):2547-60. Epub 2008 Mar 10. PMID: 18332042 [PubMed - indexed for MEDLINE]

bullet Delaval B, Doxsey S.
Genetics. Dwarfism, where pericentrin gains stature.
Science. 2008 Feb 8;319(5864):732-3. No abstract available. PMID: 18258883 [PubMed - indexed for MEDLINE]

bullet Peters PJ, Duenas-Decamp MJ, Sullivan WM, Brown R, Ankghuambom C, Luzuriaga K, Robinson J, Burton DR, Bell J, Simmonds P, Ball J, Clapham PR.
Variation in HIV-1 R5 macrophage-tropism correlates with sensitivity to reagents that block envelope: CD4 interactions but not with sensitivity to other entry inhibitors.
Retrovirology. 2008 Jan 18;5:5 PMID: 18205925 [PubMed - indexed for MEDLINE]

bullet Sanchez-Merino V, Farrow MA, Brewster F, Somasundaran M, Luzuriaga K
Identification and characterization of HIV-1 CD8+ T cell escape variants with impaired fitness.
J Infect Dis. 2008 Jan 15;197(2):300-8. PMID: 18177249 [PubMed - indexed for MEDLINE]


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