DeepSeq Analytical Tools & Bioinformatics

The High Performance Computing WIKI
https://hpc.umassmed.edu/wiki/index.php?title=Welcome_to_the_Scientific_Computing_for_Innovation_Cluster

GMOD: Generic Model Organism Database
http://gmod.org/wiki/Main_Page

Open source software GenomeBrowse
http://gmod.org/wiki/GBrowse

Illumina (Solexa) Data Analysis, presentation by Dr. David Lapointe, 20 Mar 2008 - please note some links are out of date! ( get it )

Short-Read Sequence Alignment Software List
http://en.wikipedia.org/wiki/Sequence_alignment_software#Short-Read_Sequence_Alignment

Other Things and Stuff:

Gene Expression Omnibus at NIH