Courses in Immunology & Virology

BBS 751 Introduction to Immunology 

Designed for medical students, this intensive, five- or six-week survey provides an introduction to basic concepts in immunology and immunopathology and is comprised of sections of MG600 Microbiology and PA610 Pathology.  Not a prerequisite for IM770 Introduction to Immunology and Virology and is recommended only for students who are not planning to specialize in immunology or students transferring into the Immunology & Virology Program at the beginning of their second year.  R. Gerstein. Fall. 2 credits.

BBS 822 Advanced Animal Virology

This is a paper reading-based course discussing in depth new findings in animal virology, including viral biochemistry and molecular biology, genetics, oncogenesis, and pathogenesis.  The course will be team-taught by UMMS faculty.  The course will begin with introductory lectures to provide background for more advanced readings.  Students will then cover different specific areas chosen by the professors in detail with paper readings.  At the end of the course the students will write a research proposal and present it to the class and faculty.  R. Welsh. Fall. 3 credits. Prerequisite: IM770 or IM742.

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BBS 832a Introduction to Flow & Image Cytometry

The emphasis of the course will be an introduction to the practical aspects of Flow and Image Cytometry.  As the majority of the GSBS graduates will either rely on or be exposed to data generated from Flow and Image Cytometry, the course will enhance their understanding of the technology, instrumentation skills, applications and interpretation of data.  This course will be a hands on, lab-based program emphasizing on Flow and Image Cytometry instrumentation, components, cell sample staining procedures for immunophenotyping, DNA analysis and Image analysis.  Students will participate in polychromatic Flow and Image Cytometry experiments and will progress from flow Cytometry analysis to cell sorting.   R. Konz. Fall. 2 credits. Prerequisites: General knowledge of Cell Biology and Immunology, IM732b (which may be taken concurrently).

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BBS 832b Introduction to Flow & Image Cytometry

The emphasis of the course will be an introduction to the practical aspects of Flow and Image Cytometry.  As the majority of the GSBS graduates will either rely on or be exposed to data generated from Flow and Image Cytometry, the course will enhance their understanding of the technology, applications and interpretation of data.  The course will as well incorporate guest lectures from leaders I the field.  Part one will consist of lectures discussing theory, optics, fluorescence characteristics and instrumentation.  Part two will progress to cell sorting, complimentary technology such as Confocal microscopy and advanced applications which rely on these novel technologies.  R. Konz. Fall. 1 credit. Prerequisite: General knowledge of Cell Biology and Immunology.

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BBS 846 Immunology / Virology Tutorial   

Students in the class will read one primary and one review paper the week before each class.   The topic, paper, and review will be chosen by two student mentors.  In a brief presentation; the mentors will describe the current state of the field and summarize the review.  The class will be split into two groups, pro and con.  Each group will present arguments for their opinion.  The purpose is to have more discussion of positives and negatives of technique, systems, conclusions, etc.   M. Seedhom. Summer. 1 credit. Prerequisites: Core Course 

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BBS 755 Biology of Infectious Disease   

Infectious disease is among the strongest agents of natural selection, and adaptations constituting the armament of pathogens and the defense of the host involve many of the most fascinating mechanisms in biology.   This course presents a modern view of the fundamental biology of bacterial and viral disease, providing background for advanced course work in microbiology, microbial pathogenesis and immunology.  We will focus on three themes; (1) basic properties of microbes and the mammalian host defenses that have evolved to respond to them, (2) the interplay - in both dynamic and evolutionary sense - between host defenses and microbial virulence, and (3) the mechanisms of pathogenesis during infection.  Comparative clinical and epidemiological pictures of selected diseases will be presented, and will serve as a framework for development of key molecular, cellular, and physiological concepts.  This course is an alternative to IM770 but includes a shorter immunology section and adds a section focusing on bacterial pathogenesis.  Students taking either this course or IM770 will be eligible to continue advanced studies in either the IVP or MGM programs.   B. Akerly. Spring. 3 credits. Prerequisites: Core Course Blocks I and II. 

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BBS 755a Introduction to Immunology 

This is the immunology component of IM742 (MG742) Biology of Infectious Disease. B. Akerly. Spring. 1 credit. Prerequisite: Core Course Blocks I and II. 

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BBS 755b Introduction to Bacteriology   

This is the bacteriology component of IM742 (MG742) Biology of Infectious Disease. B. Akerly. Spring. 1 credit. Prerequisite: Core Course Blocks I and II.

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BBS 755c Introduction to Virology  

This is the virology component of IM742 (MG742) Biology of Infectious Disease. B. Akerly. Spring. 1 credit. Prerequisite: Core Course Blocks I and II.

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BBS 756 Introduction to Immunology & Virology   

This course provides students with a working knowledge of the immune system and the basic biology of viral pathogens.  Topics to be covered in the immunology section include the structure, function and genetics of immunoglobulins; T lymphocyte antigen receptors and major histocompatibility complex-encoded proteins; the development and differentiation of lymphocytes; cell-cell interactions in the immune system; and regulation of immune responses.  The virology section is shared with MG742c and covers the basic biology of viral pathogens, mechanisms for evasion of and resistance to host defenses, and mechanisms of viral pathogenesis.  A textbook is used to illustrate experimental approaches to current questions.  L. Stern. Spring. 3 credits. Prerequistite: Graduate Core I and II or equivalent.

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BBS 756a Introduction to Immunology

IM770a is the immunology component of IM770 “Introduction to Immunology and Virology” consisting of the first two thirds of that course.  See listing for IM770 for details.  L. Stern. Spring. 2 credits. Prerequisite: Graduate Core I and II or equivalent.

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BBS 756b Introduction to Virology

IM770b is the virology component of IM770 “Introduction to Immunology and Virology” consisting of the last third of that course.  IM770b meets together with MG742c.  See course listing for MG742c for details. L. Stern. Spring. 1 credit. Prerequisite: Graduate Core I and II or equivalent.

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BBS 821 Molecular & Cellular Immunology

Some of the most active areas of current immunology are investigated through the reading and discussion of research papers.  Students further develop the ability to pose questions and design experiments to answer them through writing a research proposal.  Topics to be covered include: regulation of lineage specification / commitment and antigen receptor gene recombination; mechanisms of immunological tolerance and lymphocyte activation, cellular transactions and their consequences (e.g. APC:T cell); and immune responses in infectious diseases. J. Kang. Fall. 3 credits. Prerequisites: Graduate Core Course and IM770 or their equivalent.

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BBS 833 Graduate Student Seminar in Immunology & Virology

Advanced IVP graduate students present seminars on their thesis research.  A. Rothman. Fall. 1 credit. Prerequisites: IM770/MG770 or IM742/MG742.

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BBS 823 Advanced Bacterial Pathogenesis 

Spanning the eukaryotic and prokaryotic worlds and involving an array of disciplines -- from genetics, cell biology, and immunology, through epidemiology and evolutionary biology -- bacterial pathogenesis is a fascinating and dynamic area of study.  In particular, exploring the intricate mechanisms that pathogenic bacteria have evolved for manipulating mammalian systems at the cellular and molecular levels is contributing much to our knowledge of cell biology and immune system function.  Advances in microbial genomics and genomic level genetic approaches, coupled with excellent small animal infection models and sophisticated mouse genetics, hold the promise of continued rapid progress.  This course, grounded in current literature, will introduce students to selected topics at the forefront of research in bacterial pathogenesis.  Specific topics to be investigated will be based on interests of the class.  Students will present reviews of selected research articles and develop and present brief research proposals addressing issues related to the articles under review.  In addition to introducing the modern literature and experimental approaches to bacterial pathogenesis research, the format of this course is intended to assist students with preparation for qualifying examinations.  The participating faculty will introduce topics, provide background information, and meet individually with students to provide constructive criticism of in-class presentations.  The majority of class time will be devoted to open discussion. J.Goguen, B.Akerley. Fall. 2 credits. Prerequisites: General Core Course or special permission from the instructor. 

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BBS 834 Immunobiology & Virology Seminar & Discussion

Leading researchers present a weekly seminar on a basic or clinical immunology and virology topic.  Prior to the seminar, students read papers suggested by the seminar speaker and discuss the papers in class.  Following the seminar, graduate students meet with the speaker for a discussion of the formal seminar.  This course surveys the most important areas of basic and clinical immunology and virology including, but not limited to, antigen presentation; gene rearrangements; and expression of the genes for antigen receptors, immune tolerance, cytokines, immune cell development, immunodeficiency diseases, autoimmune diseases, human immune system malignancies and immune response to infectious agents such as viruses, parasites and bacteria.  F. Chan, E. Szomolanyi-Tsuda. Spring. 2 credits. Prerequisite: IM770 taken previously or concurrently.

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MS850 Laboratory Rotation in Immunology & Virology

Laboratory rotations are defined periods of research experience under the direction of a faculty member; they are intended to familiarize the student with concepts and techniques in several areas of research and to assist the student in evaluating research laboratories and projects that might be developed into a dissertation project.  The student will participate in an ongoing research project, gain familiarity with concepts underlying the research, acquire a working knowledge of techniques used in the research, and write a report and present an oral summary of the results of the research.  IV Faculty. 3-4 credits each.

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MS860 Qualifying Examination

R. Gerstein, T. Morrison. Fall, Spring and Summer. Variable credits up to 4.

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MS900 Thesis Research in Immunology or Virology

IV Faculty. Variable credits.

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