Technical Bulletins and FAQ Lists

ChIP-SEQ Technical Note  (get it)
Small RNA Library FAQs  (get it)
DNA Library FAQs  (get it)

Analytical Tools & BioInformatics

BioTools: UNIX tutorial, primer design, and essential tools
http://biotools.umassmed.edu

GMOD: Generic Model Organism Database
http://gmod.org/wiki/Main_Page
Open source software which includes
GenomeBrowse http://gmod.org/wiki/GBrowse

Illumina Pipeline Software User Guide  (get it)

Solexa Data Analysis, presentation by Dr. David Lapointe 20 Mar 2008 ( get it )

Short-Read Sequence Alignment Software List
http://en.wikipedia.org/wiki/Sequence_alignment_software#Short-Read_Sequence_Alignment

Other Things and Stuff

Gene Expression Omnibus at NIH