2006

SA Heilman, YH Kuo, CS Goudswaard, PJ Valk and LH Castilla (2006) Cbfbeta reduces Cbfbeta0SMMHC-associated acute myeloid leukemia in mice. Cancer Res. 66: 11214-11218. 

B Deplancke, V Vermeirssen, HE Arda, NJ Martinez,  AJ Walhout (2006) Gateway-compatible yeast one-hybrid screens. CSH Protocols (online journal).

AJ Walhout (2006) Unraveling transcription regulatory networks by protein-DNA and protein-protein interaction mapping. Genome Res. 16: 1445-1454.

AJ Walhout (2006) Networking at the second Interactome Meeting. Expert Rev. Proteomics 3: 477-479.

A Mukhopadhyay, SW Oh and HA Tissenbaum (2006) Worming pathways to and from DAF-16/FOXO. Exp. Gerontol. 41: 928-934.

M Ogata, S Hino, A Saito, K Morikawa, S Kondo, S Kanemoto, T Murakami, M Taniguchi, I Tanii, K Yoshinaga, S Shiosaka, JA Hammarback, F Urano and K Imaizumi (2006) Autophagy is activated for cell survival after ER stress. Mol. Cell Biol. 26: 9220-9231. 

AJ Antczak, T Tsubota, PD Kaufman and JM Berger (2006) Structure of the yeast histone H3-ASF1 interaction: implications for chaperone mechanism, species-specific interactions, and epigenetics. BMC Struct. Biol. 6: 26.

L Covassin, JD Amigo, K Suzuki, V Teplyuk, J Staubhaar and ND Lawson (2006) Global analysis of hematopoietic and vascular endothelial gene expression by tissue specific microarray profiling in zebrafish. Dev. Biol. 299: 551-562. 

J Dostie, TA Richmond, RA Arnaout, RR Selzer, WL Lee, TA Honan, ED Rubio, A Krumm, J Lamb, C Nusbaum, RD Green and J Dekker (2006) Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements. Genome Res. 16: 1299-1309. 

KL Lipson, SG Fonseca, S Ishigaki, LX Nguyen, E Foss, R Bortell, AA Rossini and F Urano (2006) Regulation of insulin biosynthesis in pancreatic beta cells by an endoplasmic reticulum-resident protein kinase IRE1. Cell Metab. 4: 245-254. 

JG Teodoro, AE Parker, X Zhu and MR Green (2006) p53-mediated inhibition of angiogenesis through up-regulation of a collagen prolyl hydroxylase. Science 313: 968-971. 

N Gheldof, TM Tabuchi and J Dekker (2006) The active FMR1 promoter is associated with a large domain of altered chromatin conformation with embedded local histone modifications. Proc. Natl. Acad. Sci. USA 103: 12463-12468. 

Y Wang, SW Oh, B Deplancke, J Luo, AJ Walhout and HA Tissenbaum (2006) C. elegans 14-3-3 proteins regulate life span and interact with SIR-2.1 and DAF-16/FOXO. Mech. Ageing and Dev. 127: 741-747. 

DW Heilman, JG Teodoro and MR Green (2006) Apoptin nucleocytoplasmic shuttling is required for cell type-specific localization, apoptosis and recruitment of the anaphase-promoting complex/cyclosome to PML bodies. J. Virol. 80: 7535-7545. 

H Shen and MR Green (2006) RS domains contact splicing signals and promote splicing by a common mechanism in yeast through humans. Genes Dev. 20: 1755-1765. 

BC Lewis (2006) Development of the pancreas and pancreatic cancer. Endocrinol. Metab. Clin. North Am. 35: 397-404. 

B Deplancke, A Mukhopadhyay, W Ao, AE Elewa, CA Grove, NJ Martinex, R Sequerra, L Doucette-Stamm, JS Reece-Hoyes, IA Hope, HA Tissenbaum , SE Mango and AJ Walhout (2006) A gene-centered C. elegans protein-DNA interaction network. Cell 125: 1193-1205. 

J Recht, T Tsubota, JC Tanny, RL Diaz, JM Berger, X Zhang, BA Garcia, J Shabanowitz, AL Burlingame, DF Hunt, PD Kaufman and CD Allis (2006) Histone chaperone Asf1 is required for acetylation of histone H3 lysine 56, a modification associated with S phase in mitosis and meiosis. Proc. Natl. Acad. Sci. USA 103: 6988-6993. 

SR Oikemus, J Queiroz-Machado, K Lai, N McGinnis, C Sunkel and MH Brodsky (2006) Epigenetic telomere protection by Drosophila DNA damage response pathways. PLoS Genet. 2: e71. 

LD Covassin, JA Villefranc, MC Kacergis, BM Weinstein and ND Lawson (2006) Distinct genetic interactions between multiple Vegf receptors are required for development of different blood vessel types in zebrafish. Proc. Natl. Acad. Sci. USA 103: 6554-6559. 

U Acharya , MB Edwards, RA Jorquera, H Silva, K Nagashima, P Labarca and JK Acharya (2006) Drosophila melanogaster Scramblases modulate synaptic transmission. J. Cell. Biol. 173: 69-82. 

A Miele, N Gheldof, TM Tabuchi, J Dostie and J Dekker (2006) Mapping chromatin interactions by Chromosome Conformation Capture (3C). In: Current Protocols in Molecular Biology (FM Ausubel, et al., eds.). Chapter 21.11.1-21.11.20. John Wiley & Sons, Hoboken, N.J.

KL Lipson, SG Fonseca and F Urano (2006) Endoplasmic reticulum stress-induced apoptosis and auto-immunity in diabetes. Curr. Mol. Med. 6: 71-77. 

SW Oh, A Mukhopadhyay, BL Dixit, T Raha, MR Green and HA Tissenbaum (2006) Identification of direct DAF-16 targets controlling longevity, metabolism and diapause by chromatin immunoprecipitation. Nat. Genet. 38: 251-257. 

YH Kuo, SF Landrette, SA Heilman, PN Perrat, L Garrett, PP Liu, MM Le Beau, SC Kogan and LH Castilla (2006) Cbfbeta-SMMHC induces distinct abnormal myeloid progenitors able to develop acute myeloid leukemia. Cancer Cell 9: 57-68. 

J Dekker  (2006) The three C's of chromosome conformation capture: controls, controls, controls. Nat. Methods 3: 17-21. 

Y Wang and HA Tissenbaum (2006) Overlapping and distinct functions for a C. elegans SIR2 and DAF-16/FOXO. Mech. Ageing Dev., 127: 48-56. 

HP Ostendorff, B Tursun, K Cornils, A Schlüter, A Drung, C Güngör and I Bach (2006) Dynamic expression of LIM cofactors in the developing murine neural tube. Dev. Dyn. 235: 786-791. 

D Gabellini, G D'Antona, M Moggio, A Prelle, C Zecca, R Adami, B Angeletti, P Ciscato, MA Pellegrino, R Bottinelli, MR Green and R Tupler (2006) Fascioscapulohumeral muscular dystrophy in transgenic mice by over-expression of FRG1. Nature 439: 973-977. 

X Meng and SA Wolfe (2006) Identifying DNA sequences recognized by a transcription factor using a bacterial one-hybrid system. Nature Protoc. 1: 30-45. 

X Meng, RM Smith, AV Giesecke, JK Joung and SA Wolfe  (2006) A counter-selectable marker for bacterial-based interaction trap systems. BioTechniques 40: 179-184.